-header string
Header name for the simulated files. The default name is sim.
For example,
-header study
The simulated files will be named as study.map, study1.ped, study1.phe...
-folder string
Folder name for storing the simulated files. The default name is sim.
For example,
-folder test
The folder named test will be created under the same directory you are running SeqSIMLA. All of the simulated files will be placed in the folder.
-batch integer
The number of simulated replicates that will be generated.
For example,
-batch 5000
5000 replicates of ped and phe files will be generated.
-fam number
he number of default families that will be simulated in a replicate. SeqSIMLA can generate a three generation family structure as the default family structure.
The family structure is:
Individual 7 will be used as a proband.
For example,
-fam 500
500 families with the same structure shown in the figure above will be simulated in each replicate, where at least individual 7 is affected.
-cc number,number
The numbers of cases and controls that will be simulated. The first number is for cases and the second number is for controls.
For example,
-cc 1000,2000
1000 cases and 2000 controls will be generated in each replicate.